PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA020285-PA
Common NameOsI_20818
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 344aa    MW: 35364.4 Da    PI: 9.9973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA020285-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.34.1e-06240280954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  BGIOSGA020285-PA 240 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 280
                       599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-10237285No hitNo description
SuperFamilySSF474591.44E-12237289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9240288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD RFAFPNVAET  60
TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT ALPPSKRKLP  120
EKYPVVGTSS TTKTTTTSET AAERRSTKRA AGGSSSITFG GGRHGAGAAA ALLGLGRGYE  180
PDTEAIAQVK EMIYRAAAMR PVTLGGAASA SDPSSAAPPP PQRPRRKNVR ISSDPQTVAA  240
RLRRERVSER LRVLQRLVPG GSKMDTATML DEAASYLKFL KSQLEALETL GNGNGNGNLL  300
HHGYYTGSRN ATATAATGSS NSTVLAFGRD GLAGFVKSNR NLQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226RPRRK
2240245RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638480.11e-179PREDICTED: uncharacterized protein LOC9269440
TrEMBLB8AW730.0B8AW73_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA020285-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.15e-28bHLH family protein